3' end of L1 retrotransposon, L1ME3B_3end subfamily
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L1ME3B_3end contain a (near) consensus target site for Charlie type DNA transposon at pos 396-403 (CCCTAGAG). These sites are often occupied (in either orientation) by contemporary or somewhat younger elements (like MER113).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 989 positions long. The average length of non-redundant hits to the model is 330.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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