LTR29 (Long Terminal Repeat) for ERV1 endogenous retrovirus
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Putative LTR of retroelement related to the MER4/41/57/65-int group. LTR29 elements share common fragments with MER39B, MER39, and MER34. LTR29 has 4 bp TSD. Original orientation has been changed to agree with the internal sequence
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 622 positions long. The average length of non-redundant hits to the model is 355.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : LTR29 [Requires Repbase registration]