LTR32 (DF0000488)

LTR32 (Long Terminal Repeat) for ERVL endogenous retrovirus

Description

Instances of this family may be subdivided at least in two subfamilies. LTR32 sequences belong presumably to the endogenous retrovirus HERV32, related to the human retroviruses HERV18 and HERVL, and mouse retrovirus MERVL. Pol protein shows significant similarity to the Pol proteins encoded by MERVL, human and simian foamy viruses, fish retrovirus (walleye) and Gypsy-related transposon MAG from silkworm. Also, primate-specific rather than eutherian- or even euarchontoglire-wide.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL Article

Hit Statistics

The model is 457 positions long. The average length of non-redundant hits to the model is 302.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 1060 1417 998 1307

External Database Links

  • Repbase : LTR32 [Requires Repbase registration]