Sequence
--------

UCSC Genome Browser assembly ID: dm6
Sequencing/Assembly provider ID: The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
Assembly date: Aug. 2014
GenBank accession ID: GCA_000001215.4
NCBI Genome information: NCBI genome/47 (Drosophila melanogaster)
NCBI Assembly information: NCBI assembly/202931 (The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics)
BioProject information: NCBI Bioproject: 164


  wget http://hgdownload.soe.ucsc.edu/goldenPath/dm6/bigZips/dm6.2bit
  twoBitToFa dm6.2bit dfamseq


Benchmark
---------

  Garlic-1.3 
    createFakeSequence.pl -v -m dm3 -s 162367812 --useBED --dir . -k 4 -o benchmark --no_repeats -l 7.13


Process Into Dfam
-----------------

  /home/roberthubley/dfam/branches/release_2.0/Scripts/update/make_dfamseq.pl -a dm6 /var/lib/XfamProduction/Dfam/dfamseq/dm6


Cytoband Data
-------------

wget http://hgdownload.soe.ucsc.edu/goldenPath/dm6/database/cytoBand.txt.gz
cat cytoBand.txt | awk '{ print $1 }' | sort | uniq | awk '{ print $1 "        " $1 }' > cytoBandOrder.txt